Statistical Population Genomics (Methods in Molecular Biology) [Paperback]

Description: Part I: Essential Concepts 1. A Population Genomics Lexicon Gustavo Valadores Barroso, Ana Filipa Moutinho, and Julien Y Dutheil Part II: Statistical Methods for Analyzing Genomes in Populations 2. Processing and Analyzing Multiple Genomes Alignments with MafFilterJulien Y Dutheil 3. Data Management and Summary Statistics with PLINK Christopher C Chang 4. Exploring Population Structure with Admixture Models and Principal Components Analysis Chi-Chun Liu, Suyash Shringapure, Kenneth Lange, and John Novembre 5. Detecting Positive Selection in Populations using Genetic Data Aggelos Koropoulis, Nikolaos Alachiotis, and Pavlos Pavlidis 6. polyDFE: Inferring the Distribution of Fitness Effects and Properties of Beneficial Mutations from Polymorphism Data Paula Tataru and Thomas Bataillon 7. MSMC and MSMC2: The Multiple Sequentially Markovian Coalescent Stephan Schiffels and Ke Wang 8. Ancestral Population Genomics with Jocx, A Coalescent Hidden Markov Model Jade Yu Cheng and Thomas Mailund 9. Coalescent Simulation with sprime Jerome Kelleher and Konrad Lohse 10. Inference of Ancestral Recombination Graphs using ARGweaver Melissa Hubisz and Adam Siepel Part III: Advances in Population Genomics 11. Population Genomics of Transitions to Selfing in Brassicaceae Model Systems Tiina M. Mattila, Benjamin Laenen, and Tanja Slotte 12. Genomics of Long- and Short- Term Adaptation in Maize and Teosinte Anne Lorant, Jeffrey Ross-Ibarra, and Maud Tenaillon 13. Neurospora from Natural Populations: Population Genomics Insights Into the Life History of a Model Microbial Eukaryote Pierre Gladieux, Fabien De Bellis, Christopher Hann-Soden, Jesper Svedberg, Hanna Johannesson, and John W Taylor 14. Population Genomics of Fungal Plant Pathogens and the Analyses of Rapidly Evolving Genome Compartments Christoph J. Eschenbrenner, Alice Feurtey, and Eva H. Stukenbrock 15. Population Genomics on the Fly: Recent Advances in Drosophila Annabelle Haudry, Stefan Laurent, and Martin Kapun 16. Genomic Access to the Diversity of Fishes Arne W. Nolte 17. Avian Population Genomics Taking Off: Latest Findings and Future Prospects Kira E. Delmore and Miriam Liedvogel 18. Population Genomics of the House Mouse and the Brown Rat Kristian K Ullrich and Diethard Tautz 19. Population Genomics in the Great Apes David Castellano and Kasper Munch

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